rs248838778 SNP Detail

Summary

• ID
  rs248838778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17693865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACTCCACT TTAAGGTAGA CCTAGGAACG CTTTGGGCCT
  CAGTTTCCCT CCGTCTATCA CCCCAGGACC TGGCAACTGT TGCAGGCTCC CCCCCCAGAC
  R
  TTACAAAGTG TGTGGAGCAC GCCCGGCTCT CGGAAGCGCT CTACACCCGC GAGCTGTTAC
  GTCAGTGGGT CCCTCGGCGG CGCCCGGGCT GTCCTCCTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321756054	CHEV_6_17643866	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248838778					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17693865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	within coordinates
Gm55211	predicted gene, 55211	309 bp downstream
Gm55212	predicted gene, 55212	71 bp upstream
Gm55213	predicted gene, 55213	1036 bp upstream
Gm55215	predicted gene, 55215	1488 bp upstream
Rr626833	regulatory region 626833	922 bp distal
Rr626834	regulatory region 626834	within coordinates
Rr626835	regulatory region 626835	678 bp proximal
Rr626836	regulatory region 626836	849 bp proximal
St7	suppression of tumorigenicity 7	within coordinates
Tssr55085	transcription start site region 55085	248 bp downstream
Tssr55086	transcription start site region 55086	39 bp upstream
Tssr55087	transcription start site region 55087	99 bp upstream
Tssr55088	transcription start site region 55088	139 bp upstream
Tssr55089	transcription start site region 55089	185 bp upstream
Tssr55090	transcription start site region 55090	304 bp upstream
Tssr59909	transcription start site region 59909	829 bp downstream