rs248852587 SNP Detail

Summary

• ID
  rs248852587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161079688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GCCCTAGGTC CAATCGCCAG
  Y
  GCTAAGGTGT GGTGGAGGAC AATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320080698	CHEV_1_163182249	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248852587					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161079688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi926	CpG island 926	688 bp distal
Gm70781	predicted gene, 70781	within coordinates
Prdx6	peroxiredoxin 6	908 bp upstream
Rr372334	regulatory region 372334	1396 bp downstream
Rr396460	regulatory region 396460	769 bp downstream
Rr396461	regulatory region 396461	307 bp downstream
Rr421776	regulatory region 421776	1366 bp distal
Rr421777	regulatory region 421777	964 bp distal
Rr421778	regulatory region 421778	409 bp distal
Rr421779	regulatory region 421779	592 bp proximal
Rr421780	regulatory region 421780	1977 bp proximal
Tssr14577	transcription start site region 14577	1209 bp upstream
Tssr14578	transcription start site region 14578	979 bp upstream
Tssr14579	transcription start site region 14579	974 bp upstream
Tssr14580	transcription start site region 14580	932 bp upstream
Tssr14581	transcription start site region 14581	590 bp upstream