rs248852983 SNP Detail

Summary

• ID
  rs248852983
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141464750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGTGAGTG GAGCCCCAGG
  GGGACTCGGC GGCCAGTCCT CGGGGGGCCG GACGAGGAGG AGCGGGAAGA TGGAGCGGTG
  GCGGCGGGGC GGAGGGTGGC GGCCCCATGG CCCGGCCCCT GGCTGGCCCC GCGTCCCCGC
  CCTCCCTCTC GGCTTCCTCC CGCCGCCCGC CTGCGCCTGG GGGGCTGGTC CGGAGCAGGC
  S
  GAGGGCTGAG GGTGGCGCTG GCCCGGAGGG CGGGCGTGAG GGGCCAGGGG GGGTGGAGCT
  GGGGGTTCGG GGGTGTACCC AGGGGCGGGA GGCTGGACCG GGACTGCTCT AAATTGGCTG
  GAGAGGGGGC CCCGTCGGCG GCGAAGTTGC TAGCTGGGGG CAGAGACGGC CACGCGGTTG
  CAGGAGTAAG ACCCCCCCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404780375	MGP_WTSI_X_139116297	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248852983					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404780375	MGP_WTSI_X_139116297	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141464750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22978	CpG island 22978	within coordinates
Tmem164	transmembrane protein 164	within coordinates
Tssr162238	transcription start site region 162238	913 bp downstream
Tssr162239	transcription start site region 162239	315 bp downstream
Tssr162240	transcription start site region 162240	97 bp upstream
Tssr162241	transcription start site region 162241	129 bp upstream