rs248853059 SNP Detail

Summary

• ID
  rs248853059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115220053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAGTAAC TCGGGTTTCT
  TTTTCTTTTC TTCCTTTCTT TCTTTTTTTT TTTTCAAATT TGGTAAACTT TCCTCGGAAA
  AGGAGCAAAT GTTTCCAGAT GTGCGGACCC ACACACAAAG GACAAGAGCG AGGCTCCCCT
  TGCTCTTCGC AGCTGGGCAA GTGACCAAAG TCAGAGGACC TTGTTCTTCT GACACGACCG
  R
  GACTCAAGAC TGCCTAGGCT CCCGTTTCCG TCACCCCGCT CCCCTCCCAG GTTTACCTGT
  GGAAGCTGAT GTTAATGTGC TTGTTGTAGG TAGCAGCACA GCCCGCCGCG GCGCAATTGG
  TCGGCATTTC CCCGGGCCCC TCATTCGGCG CCACCTTACG CCACTTCGGA GGCGCTGCCC
  GCTAAGCAAG CTTCTGTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484718	CHEV_10_114821204	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248853059					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115220053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	within coordinates
Rr402239	regulatory region 402239	580 bp upstream
Rr439213	regulatory region 439213	within coordinates
Rr439214	regulatory region 439214	145 bp proximal
Rr439215	regulatory region 439215	252 bp proximal
Rr439216	regulatory region 439216	811 bp proximal
Rr439217	regulatory region 439217	1074 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	within coordinates
Tssr95813	transcription start site region 95813	198 bp downstream
Tssr95814	transcription start site region 95814	773 bp upstream
Tssr95815	transcription start site region 95815	803 bp upstream
Tssr95816	transcription start site region 95816	897 bp upstream
Tssr99330	transcription start site region 99330	178 bp downstream
Tssr99331	transcription start site region 99331	189 bp downstream
Tssr99332	transcription start site region 99332	240 bp downstream
Tssr99333	transcription start site region 99333	328 bp downstream
Tssr99334	transcription start site region 99334	368 bp downstream
Tssr99335	transcription start site region 99335	603 bp downstream
Zfc3h1	zinc finger, C3H1-type containing	811 bp upstream