rs248859245 SNP Detail

Summary

• ID
  rs248859245
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37466247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGCAAT GGATCCCACT
  GTCACAGGCC AGCCACACTA GGACTGTTGA ATGCTTCTAT TCCACTGAGT GTCTAGGTCA
  TGGCTTTCCT TGTTAAAGGG AGAATGAGTG GGAGGGATAT ACCAGTGTCC ACTCAGGTTG
  GGAACATGAT TAGCCAGCTT GGGGCTCCGA GCTGAGCTGA AGGCTGGCTG GGATTCCAGG
  K
  TTGGGGTGTA GGGGTGTCTC TCCCAGCATG TTTGGGACCC ACCCACCCCT GTAACAGCAA
  ATCTGTTCCC CAATCTGTCT CTGGCACATC TTTAGTCCCC CCCCCCCTCC ACCAAATGGC
  AGGATGTCCT AGGAACTAAG GTCCTTGCCT AAATGACAAA CACATCTGTA GCCTCTGCCT
  GTGCCAACTT CCCCTGTGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377243258	MGP_WTSI_9_37362536	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248859245					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377243258	MGP_WTSI_9_37362536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37466247 () rs orientation: forward

Symbol	Name	Function Class
Gm46107	predicted gene, 46107	493 bp upstream
Rr676717	regulatory region 676717	1602 bp distal
Rr676718	regulatory region 676718	169 bp distal
Rr676719	regulatory region 676719	206 bp proximal
Rr676720	regulatory region 676720	469 bp proximal
Tssr84410	transcription start site region 84410	663 bp upstream
Tssr84411	transcription start site region 84411	686 bp upstream
Tssr84412	transcription start site region 84412	694 bp upstream
Tssr84413	transcription start site region 84413	720 bp upstream
Tssr84414	transcription start site region 84414	742 bp upstream
Tssr88860	transcription start site region 88860	1969 bp upstream
Tssr88861	transcription start site region 88861	1554 bp upstream