rs248861569 SNP Detail

Summary

• ID
  rs248861569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79489562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTCCCTG ATAAGTCAGG
  ATGGAGACCA ACTAGATTAA ACAGAGGAAA CCGAGCACGG TCACATGCCT GTAAATTCAG
  CATTTAAGAG GCCAAAGCAG GAGGGTCACA AGTTCAAGGC CAGCCCAGGC ACCTCAGTAG
  ACCTGGTCTC AATATTTAAA ACAGAGGGGT AGATGGATGG CTCAGTGGCT GTGCGGACTA
  R
  TTTTATGTCA ACCTAAAAGG CTAGAGTCAT CTGGGAGATG GAACCTCACT TGAGGCCATG
  CTTTCAGAAG ATCTGGCTGG AGACAAGCCT GTAGAGTATT TTCTTAATCA GTGATATTAA
  TGTGATGAGG GTCCAGCCCA TTGTGGGTGT TGCGACCTCT GGGCTGGGTG GTCCTGAGTT
  CTAAAGAAAG CAGGCTGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372032910	MGP_WTSI_7_86984700	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248861569					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372032910	MGP_WTSI_7_86984700	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79489562 () rs orientation: forward

Symbol	Name	Function Class
Anpep	alanyl aminopeptidase, membrane	within coordinates
Tssr73153	transcription start site region 73153	1494 bp upstream
Tssr73154	transcription start site region 73154	1332 bp upstream
Tssr73155	transcription start site region 73155	1122 bp upstream
Tssr73156	transcription start site region 73156	1058 bp upstream
Tssr73157	transcription start site region 73157	860 bp upstream
Tssr73158	transcription start site region 73158	610 bp upstream
Tssr73159	transcription start site region 73159	560 bp upstream
Tssr73160	transcription start site region 73160	316 bp upstream
Tssr73161	transcription start site region 73161	1089 bp downstream
Tssr73162	transcription start site region 73162	1106 bp downstream
Tssr73163	transcription start site region 73163	1165 bp downstream
Tssr73164	transcription start site region 73164	1310 bp downstream
Tssr73165	transcription start site region 73165	1871 bp downstream
Tssr73166	transcription start site region 73166	1912 bp downstream