rs248862373 SNP Detail

Summary

• ID
  rs248862373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53858560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTCTCTCA TTTTTTTGTT CCTTTTGTTT
  TGTTGTTGTT GTTGGTTTGC CTTCAAAACA AAATTTTCTA AGTTCTGTGT GTTTACTTAT
  AAGTAAACAA CTCAGCTGCT TTTCTGTCCT CTGTGTCAAC AAGAAAATCC CCAGGTTCTG
  Y
  GTTTAGCTTG AATAATTACC AAACTGTTTG TAATTACAAT ACGAGGATGT GACCTCGGAG
  CATTTTTTTT TTGTTTCCTT TCTATGTATT TAATACATTT TAGAAGCTGA AAATACCAAA
  tctcttgtct ctgtctctgt ctctgtctct                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324044493	CHEV_12_54912764	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248862373					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53858560 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	1441 bp proximal
Rr267638	regulatory region 267638	242 bp proximal