rs248875122 SNP Detail

Summary

• ID
  rs248875122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43357554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCTGTA GGGGGTGGAG
  GTGGGATGGG GGTGGGGGAA GGTATTAAAG GTGTCCACAC CACCTGGCTT TTGTTGTTTT
  CTCAGACTGG GTCTCACTAT GTATCCCATA CTGGGATGGT CTTTTGGTTT CTCTGTAGAC
  CAGGCTGCCC TAGAACTCAG GGATCCACCT ACCTGCCATC TCCATCTCCG CTTTCTCCTA
  Y
  CAGTGTTGGA ACCAAAAGAA TGAACCACCA TGACCATGTC AGAGATGCTG TTTTAGTGAA
  GTTAAACAGT AAAGTTAGCG TTCTTTCTCC ACACACACAA GAAGTAAGAC CAGTTAGCCA
  CGAAGACAGA ATACAGACTA GCCAGCATTC CAACCGTCTG TTAGAGATTG ATAGGTTATC
  TGGGGACCCT TGGGGGCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380192196	MGP_WTSI_10_43201364	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	C	T	T	C	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248875122					SNP	C	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	C	T	T	C	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380192196	MGP_WTSI_10_43201364	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43357554 () rs orientation: forward

Symbol	Name	Function Class
Bend3	BEN domain containing 3	within coordinates
Cpgi1500	CpG island 1500	1416 bp distal
Rr430778	regulatory region 430778	777 bp distal
Rr430779	regulatory region 430779	1673 bp distal
Rr430780	regulatory region 430780	179 bp distal
Rr430781	regulatory region 430781	79 bp proximal
Rr430782	regulatory region 430782	1740 bp proximal