rs248875339 SNP Detail

Summary

• ID
  rs248875339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97746346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGGTAGT GCAAACTTTA
  TATGTCTCAG TACAGGGGAA CGCCAGGGCC AAGAAGTGGG AGTGGGTGGG TGGGGGAGTG
  TGTGGGGGAG TGTGTGGGGG ACTTTTGGGA TAGCATTGGA AATGTAAATG AAATAAATAC
  CTAATTCTTA AAAAAAAAAA GATTATTCAA TGTAAGCCTG GTGGTGGTGG AGGCAGCGCA
  Y
  GCCTTTGATC CTAGCACTTG GGAGGCAGAG GCAGGTGGAT TTCTGAGTTC CAGGCCAGCC
  TGGTCTACAA AGTGAGTTCC AGGACAGCCA GGGCTATACA GAGAAACCCT GTCTTAAAAA
  CAAAATAAAA CAAAACAAAA AAACAACAAC AACACACAAG ATTATCCAAT GTAGAAAAGG
  GTCAGACCAG ACTTTTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323123522	CHEV_9_97764712	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248875339					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97746346 () rs orientation: forward

Symbol	Name	Function Class
Clstn2	calsyntenin 2	within coordinates
Rr198247	regulatory region 198247	346 bp distal
Rr205510	regulatory region 205510	386 bp distal