rs248877989 SNP Detail

Summary

• ID
  rs248877989
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83721059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTTAATT ACTAATAATC
  TTTTCTTTCA CATGCCTGCA AAACCACCGA ATAGGTTACT ACAGTAATAA TAATCTCTTT
  CTCTAGCCCT CCTGAAAATA ATACTTGAAA CAAACCATAG AGTATAGTTT ATGTATAAAA
  ATTAGGTTAA TAAATATTTA TACTAAAAAG CAGAAATTAA GCAAAAGTTA TGCACCGGTG
  S
  TGACCTTCCT AATTCTTTGC ATTTTTCCTG ATGGCCTTGA AATGTGAGGA CACCATTGAT
  CTGTTGCTAT TCTATTTGTG TGGACTTTAT ACAAGTCTAC ATTTTATGAA TTTCAGGAGG
  CAACACTTCA GTTACTGAAT TGAGCATTGT CCTTGTGCGG AAAACAAAAT AAAAGTCGAA
  TTAGGTTTAA ATTTCCATCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389277631	MGP_WTSI_13_83712098	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248877989					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389277631	MGP_WTSI_13_83712098	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83721059 () rs orientation: forward

Symbol	Name	Function Class
Gm55122	predicted gene, 55122	within coordinates
Mef2c	myocyte enhancer factor 2C	within coordinates
Rr399	regulatory region 399	691 bp distal
Rr1598	regulatory region 1598	within coordinates
Rr483252	regulatory region 483252	824 bp distal
Rr483253	regulatory region 483253	177 bp proximal
Rr483254	regulatory region 483254	693 bp proximal
Rr483255	regulatory region 483255	1868 bp proximal
Tssr4132	transcription start site region 4132	862 bp upstream
Tssr120502	transcription start site region 120502	583 bp downstream
Tssr120503	transcription start site region 120503	550 bp downstream
Tssr120504	transcription start site region 120504	527 bp downstream
Tssr120505	transcription start site region 120505	637 bp upstream
Tssr120506	transcription start site region 120506	1535 bp upstream
Tssr123327	transcription start site region 123327	930 bp upstream
Tssr123328	transcription start site region 123328	822 bp upstream
Tssr123329	transcription start site region 123329	786 bp upstream