rs248881669 SNP Detail

Summary

• ID
  rs248881669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGGGGA GTGGGGCCGG
  GGTGGGGATA AGAAGTGGAG GGTGGGCAGA GCGAGAATCG CCAACGCTGG AAAGCGCTGA
  GCTTGCCTGA CGCTCTCCTC TCCGTACTTG GTTGCCCCCA CTCTCTCTGA AAGATTGGGA
  ACCAGAAAGG CTGCTGAGTC GGCAGTGCAG GTCTGCTTTG GTGTAAAATT CGCGGACAAA
  Y
  GTCTTCTAAG ACACCCGGTG GGGCCATGGC AACTGAGGGA GTTGGGCAAG AGAGTAAAAT
  TATCTTTTGT TTCTTCCAAG TTTCTCTTCC CCTTCTGCCA GCTCGGTGTC GGGTGTTTGT
  CAAGAAGAGA AGCTTTTTTG CAAAAATAAA AACTCCCTTC TTGTAATCAC AATCGCTAGC
  ATATCGACTC AGAGGAACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359647251	MGP_WTSI_3_127493878	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	C	C	T	T	C	C	T	T	T	T	T	T	T	C	C	T	C	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248881669					SNP	C	C	C	T	T	C	C	T	T	C	C	T	T	T	T	T	T	T	C	C	T	C	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359647251	MGP_WTSI_3_127493878	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	832 bp distal
Cpgi13801	CpG island 13801	11 bp distal
Gm56817	predicted gene, 56817	703 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	1038 bp distal
Rr584861	regulatory region 584861	1141 bp distal
Rr584862	regulatory region 584862	714 bp distal
Rr584863	regulatory region 584863	146 bp distal
Rr584864	regulatory region 584864	within coordinates
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1758 bp downstream
Tssr31595	transcription start site region 31595	1746 bp downstream
Tssr31596	transcription start site region 31596	1713 bp downstream
Tssr31597	transcription start site region 31597	1673 bp downstream
Tssr31598	transcription start site region 31598	1650 bp downstream
Tssr31599	transcription start site region 31599	1151 bp downstream
Tssr31600	transcription start site region 31600	1083 bp downstream
Tssr31601	transcription start site region 31601	1031 bp downstream
Tssr31602	transcription start site region 31602	977 bp downstream
Tssr31603	transcription start site region 31603	959 bp downstream
Tssr31604	transcription start site region 31604	835 bp downstream
Tssr31605	transcription start site region 31605	321 bp downstream
Tssr31606	transcription start site region 31606	135 bp downstream
Tssr31607	transcription start site region 31607	78 bp upstream
Tssr31608	transcription start site region 31608	146 bp upstream
Tssr31609	transcription start site region 31609	197 bp upstream
Tssr31610	transcription start site region 31610	306 bp upstream
Tssr31611	transcription start site region 31611	414 bp upstream
Tssr35598	transcription start site region 35598	1202 bp upstream
Tssr35599	transcription start site region 35599	1120 bp upstream
Tssr35600	transcription start site region 35600	1092 bp upstream
Tssr35601	transcription start site region 35601	1059 bp upstream
Tssr35602	transcription start site region 35602	742 bp upstream