rs248888938 SNP Detail

Summary

• ID
  rs248888938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110849811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCATCTAG GACAAGGCTG ATGGAGGTCA
  ATAAAATGAT CTTTGGAGTG GATCATCTTT GGGGGTGGGG TGGGTGTCTG AGTCTCATCC
  CTCTGTGGTC CAGCAGCTTA GCTTAACTAG AGTACAGTGG CTGAACAAGA CCACGTAACA
  Y
  GGAGGGTGGG GCAGTGACCA CGGGCAGTCT ACAGAATGCC CTCAGACATC GGGGAGGTCT
  TCCCCAACGA GCACTGCTGG ATTCCATTCT GTCTTTCTCC CAGGACTCTG TCTAGCTAAG
  GCAACAACTG TTCAATGGTG TGCTGTGTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323195421	CHEV_9_110923247	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248888938					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110849811 () rs orientation: forward

Symbol	Name	Function Class
D9Mit38	DNA segment, Chr 9, Massachusetts Institute of Technology 38	703 bp proximal
Ltf	lactotransferrin	within coordinates
Rr687278	regulatory region 687278	1441 bp distal
Tssr87456	transcription start site region 87456	1445 bp downstream
Tssr87457	transcription start site region 87457	200 bp upstream
Tssr87458	transcription start site region 87458	1229 bp upstream
Tssr87459	transcription start site region 87459	1647 bp upstream