rs248900774 SNP Detail

Summary

• ID
  rs248900774
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:102987921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCCCAAT CTGGCATGCT
  TATATGCTCA GAGGGATGAC CTCCGACTCC AGGGACTTCA AACCGAAGAA GACCACAAGA
  ATAGAACAGT TACTCTGATT TGAGAGTAGT TTTAGAGGTT AATTCGAGCA TTCAGCAACT
  GTTTCCTAAA CTCTAGGTGA AGTGGAACCT CAGCTGCTTC CATGGAGTTT CCTGTGAGGG
  T
  TCAATGTGCG GTGGGAGACT CTAGTGGGTA CATTCGGGGT AAATTCATAA GTGTCCCCTG
  GGAAATCCGT AGGCACGGGT GTGTGTGTGT GTGTGTGTGT GTGTGTGCAT TTCACTCCTG
  GCTTGCTTTG TGTAACATAC ACTACACATT CCAAACAGTC CCAAACAAAC ATTCCCTGAA
  TGGCCAGAGA AGGTCAAGAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323160336	CHEV_9_103013052	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248900774					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:102987921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22229	CpG island 22229	413 bp proximal
D9Mit276	DNA segment, Chr 9, Massachusetts Institute of Technology 276	42 bp proximal
Gm46128	predicted gene, 46128	within coordinates
Rab6b	RAB6B, member RAS oncogene family	1065 bp upstream
Rr401633	regulatory region 401633	1879 bp downstream
Tssr86758	transcription start site region 86758	1004 bp upstream
Tssr86759	transcription start site region 86759	1019 bp upstream
Tssr86760	transcription start site region 86760	1153 bp upstream
Tssr86761	transcription start site region 86761	1215 bp upstream
Tssr86762	transcription start site region 86762	1269 bp upstream
Tssr86763	transcription start site region 86763	1316 bp upstream
Tssr86764	transcription start site region 86764	1327 bp upstream
Tssr86765	transcription start site region 86765	1341 bp upstream
Tssr86766	transcription start site region 86766	1350 bp upstream
Tssr86767	transcription start site region 86767	1372 bp upstream