rs248901206 SNP Detail

Summary

• ID
  rs248901206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85429378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGCTCTT ACATTGAAAA
  GCTCAGGTTA AACAGGTGGG AGAAAGATGG TCTTTGGCCT TCCTTCCCCT TAACTTCACT
  CTCTCCCACA GGTTAGCATT CTATCCGTGG GGTCCATGTG CCCGCCCCAG GCCAGAGCAG
  AGGTGGGTTC CGCCATGACT GAGAAAACTG AGATGGTATG TGCCTCCAGC CCAGCACCTG
  Y
  CCCTCCCTCT AAGCCGGCCT CACCTGGGCC CCTTTCTACA GAGGAGGTGG ACCACCGAAA
  CACGTGCACT CCCTGGTTGC CTCCCGGCGT GCCAGTGATA AACCTGGGAC ACACCAGGCC
  CATAGGGGCA GCCATGCCCA CCACAGAGCT CAGTGCCTTT CGGCCCTCCT TGCTGCAGCT
  AACTGCCTTG GGAAGAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375404536	MGP_WTSI_8_87226648	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248901206					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404536	MGP_WTSI_8_87226648	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85429378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20707	CpG island 20707	740 bp distal
Cpgi20708	CpG island 20708	918 bp proximal
Lyl1	lymphoblastomic leukemia 1	within coordinates
Nfix	nuclear factor I/X	1963 bp downstream
Rr178191	regulatory region 178191	1778 bp distal
Rr187001	regulatory region 187001	within coordinates
Rr368567	regulatory region 368567	1768 bp upstream
Rr401025	regulatory region 401025	1264 bp downstream
Tssr78433	transcription start site region 78433	1252 bp downstream
Tssr78434	transcription start site region 78434	980 bp downstream
Tssr78435	transcription start site region 78435	951 bp downstream
Tssr78436	transcription start site region 78436	922 bp downstream
Tssr78437	transcription start site region 78437	867 bp downstream
Tssr78438	transcription start site region 78438	839 bp downstream
Tssr78439	transcription start site region 78439	642 bp upstream
Tssr82116	transcription start site region 82116	1023 bp upstream