rs248913886 SNP Detail

Summary

• ID
  rs248913886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142619566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGTGAGG AAACTGAGGT
  TAGGGTTGGG GAGTGTCTTG CTGCATGTGC CTCAGTGAAG GCTGTGGACA CTTTGTCAAC
  TGCATTTCTA CACCAGCCAC ATCCTGCAAA GTAGGATGCA AGGTGAGGCT ATGAGAACTT
  GAACATCTCA GTGCAGGACT GTATCAGGCT CTTGTCTCTC AATGGCTCTG TGTGGCTCAT
  R
  CTTAATCAGG ACATGGTTGG TGGATATGGC CAACCCCCTT GGCACATAGC TGTTGGTCAT
  GTGGGCTAGG CCTGGGCTTG CTGGTCAAGG CTCTGACCTC TTCTTTCCCC TAGTTCTTCA
  CCTGCCTTGT GATCCTGTTT GCCTGTGAGG TGGCTGCAGG CATCTGGGGC TTCGTAAACA
  AAGACCAGGT AAGCCTAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322473966	CHEV_7_150251734	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248913886					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142619566 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	within coordinates
Tssr70273	transcription start site region 70273	870 bp downstream
Tssr70274	transcription start site region 70274	852 bp downstream
Tssr70275	transcription start site region 70275	66 bp downstream
Tssr70276	transcription start site region 70276	35 bp downstream
Tssr70277	transcription start site region 70277	104 bp upstream
Tssr70278	transcription start site region 70278	901 bp upstream
Tssr70279	transcription start site region 70279	1536 bp upstream
Tssr70280	transcription start site region 70280	1572 bp upstream
Tssr70281	transcription start site region 70281	1706 bp upstream