rs248914690 SNP Detail

Summary

• ID
  rs248914690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101901335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTTTGA GAATCAATTG
  AGGGGCATCG TGGTAGGAAC AGGGTGGAAA GAACATGGGG TAAAAATAGA TTGAAAGACT
  GGGTTGGCAA CCTGGGATCA CACTCTGTCT CCTGAGCTCT GAATGCCTTG GGTTTGCCTC
  ACCTTTGTCC AGGAGGGAGA ACTTTCTCAG ATATCTGTCT GATGGAATAT AGAACTATTC
  R
  ATCTGAAGCA TCCAGTGGAG GAGTTAAAAA TCCTAGGACT AAGTTTCAGA AGACCCTGAA
  CTCTGGACTC TGCCAGTCAG ACTAGAACAA TCTTAGGCCA CGACCTTACC CATTTCTGAG
  TCTCAGCTTC CCCCACTGGA AAACAAGGGG TTGGAGCAGA TGATACCCTT TGGCTCTGAC
  CTTCTGTGAT GCACTCTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372554864	MGP_WTSI_7_109400642	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248914690					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372554864	MGP_WTSI_7_109400642	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101901335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	1144 bp distal
Rr652563	regulatory region 652563	1515 bp distal
Rr652564	regulatory region 652564	1186 bp distal
Tssr2354	transcription start site region 2354	1852 bp downstream
Tssr68330	transcription start site region 68330	1873 bp downstream
Tssr73945	transcription start site region 73945	1990 bp upstream
Tssr73946	transcription start site region 73946	1794 bp upstream
Tssr73947	transcription start site region 73947	1649 bp upstream
Tssr73948	transcription start site region 73948	1613 bp upstream
Tssr73949	transcription start site region 73949	1580 bp upstream
Tssr73950	transcription start site region 73950	1533 bp upstream