rs248925745 SNP Detail

Summary

• ID
  rs248925745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95800268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAACACC GTGCAAGTGG
  CTGTGGGCTC ATCATGCACA GATTGTTCCC CACAGCTGCT AACAGCTCAC AGAGAAGAGT
  GGCCCAGACT CAGCCTGTTG AACACACATG GAATCCTGAA CACTGGCCAA GATGTTCCCA
  TCCTCCTAAC CTTGGGGAAC AATGTGTCTA GTGACCGCCA GACCCCCCCA ACCCTCCACC
  Y
  CCCCTACCCT CCCATCCCCC CCACCCCCCC ACCTCCACTG ATTCCCCTCC TAGTGACTTT
  TTGCAAAAAC CTCCAGGAAG CCCGGTAATC TTTTAAATTT TTCTGTAGTT TGTTGTTGCT
  TTGTATGTAC CCTCAAAAAA CGATTTTTCT CATATATGAT CAAAATGCTC AGATCCCATC
  ATAGGATTCC TCTGTTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358909660	MGP_WTSI_3_95696879	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248925745					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358909660	MGP_WTSI_3_95696879	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95800268 () rs orientation: forward

Symbol	Name	Function Class
Aph1a	aph1 homolog A, gamma secretase subunit	1013 bp upstream
BC028528	cDNA sequence BC028528	951 bp upstream
Cpgi13526	CpG island 13526	745 bp proximal
Cpgi13527	CpG island 13527	1313 bp proximal
Rr78078	regulatory region 78078	67 bp distal
Rr78079	regulatory region 78079	132 bp proximal
Rr397845	regulatory region 397845	760 bp upstream
Tssr30653	transcription start site region 30653	964 bp upstream
Tssr30654	transcription start site region 30654	997 bp upstream
Tssr30655	transcription start site region 30655	1057 bp upstream
Tssr34557	transcription start site region 34557	1020 bp upstream
Tssr34558	transcription start site region 34558	971 bp upstream
Tssr34559	transcription start site region 34559	111 bp upstream
Tssr34560	transcription start site region 34560	79 bp upstream