rs248925843 SNP Detail

Summary

• ID
  rs248925843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17812012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAGGATGT GGAAAGTGTT AAAAGGTCAG
  TGCAGTAAAG GATGAAGAAG ATAAGAAATA CCTTCTGCCC TTACAGTGCC AGGATCTTAC
  ACACAAGAAC TCAATTTACC ACGCCTAAGT CTCAACCAAA GCTCATACCC CTTTGATCCA
  Y
  AGGGAAATGT TTTACACTGT ACAATAGCAG ATCTTTTTAC ATTAGTGATT GCATCAATTC
  AGCGGTCCTC TGTAACTACT GGGATGGCTG TATTTCCACA TCAGGGTTGT AAAAAACTAC
  ATCAAATAGT TTTTTCATGT TACGTATATA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325730784	CHEV_19_17909138	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248925843					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17812012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	1150 bp proximal
Cpgi10666	CpG island 10666	1845 bp proximal
Pcsk5	proprotein convertase subtilisin/kexin type 5	within coordinates
Rr544885	regulatory region 544885	897 bp proximal