rs248927995 SNP Detail

Summary

• ID
  rs248927995
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56428206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAACTGT ACCCACTGAG
  TCCTTCCTCA CCAGGACTGG AACAAGACGA TCCTCATGGT TTGTTTCCTG AGTCTATTTT
  TGTCTCCTTA GCAGGGTGGG TGGGTGGCAG AGCCAGTGAG CTCCTATTTA TTCTGCAAAG
  CCCCAGGAAC ACTATACCCT GGGTTTCATT CTCACAAAGC AGCCCCTGAT CCACAGCAAA
  W
  CTTACCTCTA TGACTCTTAA ACTTCCTGGG TCTGACCCCC TACACACTTC CTCCCCTGCT
  ACCACCTCTA ACAGGTTACC AGTTATTAAG TATTCCCAGT CCAAGTACCT AGTTACTTCT
  AACCTGGTTT GTATCCTGGG TCTACCCCTA TCTCCCTAGT TGTCTGTTCA GAGGGAGAGT
  CAGTGGACTC GTGTTCACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398551822	MGP_WTSI_17_56260629	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248927995					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398551822	MGP_WTSI_17_56260629	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56428206 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9340	CpG island 9340	279 bp distal
Gm56918	predicted gene, 56918	129 bp downstream
Lrg1	leucine-rich alpha-2-glycoprotein 1	within coordinates
Rr340022	regulatory region 340022	within coordinates
Sema6b	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	1879 bp downstream
Tssr5174	transcription start site region 5174	991 bp downstream
Tssr5175	transcription start site region 5175	718 bp downstream
Tssr148750	transcription start site region 148750	1075 bp upstream
Tssr148751	transcription start site region 148751	892 bp upstream
Tssr148752	transcription start site region 148752	840 bp upstream
Tssr148753	transcription start site region 148753	586 bp upstream
Tssr148754	transcription start site region 148754	525 bp upstream
Tssr148755	transcription start site region 148755	388 bp upstream
Tssr148756	transcription start site region 148756	358 bp upstream
Tssr148757	transcription start site region 148757	178 bp upstream
Tssr148758	transcription start site region 148758	143 bp upstream
Tssr148759	transcription start site region 148759	691 bp downstream
Tssr148760	transcription start site region 148760	745 bp downstream
Tssr148761	transcription start site region 148761	759 bp downstream
Tssr148762	transcription start site region 148762	788 bp downstream