rs248945004 SNP Detail

Summary

• ID
  rs248945004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:91860793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC CGTCCTGCCA ATCAAGTTAG
  Y
  GCCGCTCGGG TGGGGCCGCG CTCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322789577	CHEV_8_93658064	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248945004					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:91860793 () rs orientation: forward

Symbol	Name	Function Class
Aktip	AKT interacting protein	within coordinates
Cpgi20808	CpG island 20808	within coordinates
Gm63829	predicted gene, 63829	1341 bp downstream
Rr368579	regulatory region 368579	within coordinates
Rr667489	regulatory region 667489	179 bp distal
Rr667490	regulatory region 667490	within coordinates
Rr667491	regulatory region 667491	1107 bp proximal
Rr667492	regulatory region 667492	1517 bp proximal
Tssr82405	transcription start site region 82405	143 bp upstream
Tssr82406	transcription start site region 82406	127 bp upstream
Tssr82407	transcription start site region 82407	1494 bp downstream
Tssr82408	transcription start site region 82408	1522 bp downstream
Tssr82409	transcription start site region 82409	1537 bp downstream