rs248950854 SNP Detail

Summary

• ID
  rs248950854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25405271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCAGAAT AAGTGGGGAC
  ACTCACTACA CCTCTGCTTT CTCGTTTTTT TTCTTTCCTT CCCCCTTTCT AATTTTTCAA
  GACAAGGTTT CTTTATGTAG CCCTGGCCAT CCTGGAATTC TGGCTGTATC CCTGGCTGGC
  CTTGAACTCA GAGGCAGAGG CTGCGTCCGC CTCCTGAGTG GTGGGATCAA AGGCGAGCAC
  Y
  ACCAGATCTG AGTTTCACAT CTATTTTACG GATAGGAGAA TAGGTGTGTT AGCTAAAGGG
  TTACTTAAAT GTTTATTTTA TTTATTTATT TATTTTTTGT GCTATGCTTT TCCAATTTCC
  CAAATAGACT GTAGCTTGTG TTTTTCCTAT TGTTTTCAGC CCAATGAATT CTCTGGGTGA
  GTGCCCAGCA AATATCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397871746	MGP_WTSI_17_25323242	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248950854					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397871746	MGP_WTSI_17_25323242	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25405271 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	1728 bp upstream
Cpgi8755	CpG island 8755	1001 bp distal
Cpgi8756	CpG island 8756	1566 bp proximal
Gm52286	predicted gene, 52286	1757 bp downstream
Rr370183	regulatory region 370183	1716 bp downstream
Rr523509	regulatory region 523509	1238 bp distal
Rr523510	regulatory region 523510	1610 bp proximal
Tssr5037	transcription start site region 5037	1734 bp downstream
Tssr143142	transcription start site region 143142	1695 bp downstream
Tssr143143	transcription start site region 143143	1679 bp downstream
Tssr146818	transcription start site region 146818	1895 bp upstream
Tssr146819	transcription start site region 146819	1829 bp upstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	within coordinates