rs248964775 SNP Detail

Summary

• ID
  rs248964775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97795008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGACAGAC TCTATTTTCT
  AGTTCACAGA TCCAGCCGAC TCCGGAGTAT GCAATACAAA CCCAGCAACC CTTCCACTCT
  GAGGTCAAAA CTCTTCTAAT CCAAACCCCG ATCCCATTCA TAGGAAACTG AGGCCTAGAA
  AAGTCCCAGT TAGTTAAAGG CAAAGTAAAG ACTTGAACCC ACCATTGCCT TTCGATTTGA
  R
  TGATAAGTAC TGGCATTCCA CGGGGGGGGG GGGGGGGGGG GGGCAGGGAG GGGGGTACAG
  AGGGAGGAGC TAAAAATTCT ATGTCAAAGA CGTGCTTACT TTAAAAATGG CAGCCATACA
  ATCTGTCTCT TCTTTTGGAA ATATTAATAT GACAGATTTT CATCTTGCTG TTGCTACATG
  ACGAACACGG GACCTAATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss358949070	MGP_WTSI_3_97691615	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	G	A	A	A	A	G	G	G	G	G	A	G	G	A	G	G	G	G	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs248964775					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	G	A	A	A	A	G	G	G	G	G	A	G	G	A	G	G	G	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358949070	MGP_WTSI_3_97691615	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97795008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13598	CpG island 13598	483 bp proximal
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	within coordinates
Rr581573	regulatory region 581573	1005 bp proximal
Tssr34685	transcription start site region 34685	936 bp downstream
Tssr34686	transcription start site region 34686	994 bp downstream
Tssr34687	transcription start site region 34687	1135 bp downstream
Tssr34688	transcription start site region 34688	1219 bp downstream