rs248965231 SNP Detail

Summary

• ID
  rs248965231
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76169772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCCAGGG GAGAGCCGGA
  GCGGGGCGCG GCGGAGGGCT GTCCCCGGGA TCCGTGTTCC CGGAGCTCCC CGCGGGCCTC
  CCCCGGCCTC CGCCGCCTCC ACGGGCCGCG CACCCAGGCC GTGCCCGGGC GGCGCGGCGT
  CCGCTCCCGC GAGCTCCGCA CGGAGCCCGG GCCGCGATTG CCACTCACCG AGGCCGCCGC
  S
  GCTCCGGGCC GCCGATCCGC GTCGCTCCCT CCTTCCCAGG TTAGCCGTGC CCTGCGGCCG
  CGCGAGGCCA CGGGCGCTGC GCTCGGGCGG GCTGGGGCCG GCTCGTCCTC CGCCTGCGCC
  GCGGTCGCCG TCGCCTCCCG AGTTCGGGGC TCTGCTGCAA TGTCTGCGAG GCTGACTTTG
  AGCGCCTCGC TCGCCGCCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396907174	MGP_WTSI_16_76373129	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248965231					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396907174	MGP_WTSI_16_76373129	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76169772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8372	CpG island 8372	within coordinates
Nrip1	nuclear receptor interacting protein 1	within coordinates
Rr325475	regulatory region 325475	within coordinates
Tssr139017	transcription start site region 139017	213 bp upstream
Tssr139018	transcription start site region 139018	309 bp upstream
Tssr141820	transcription start site region 141820	130 bp downstream
Tssr141821	transcription start site region 141821	955 bp downstream
Tssr141822	transcription start site region 141822	970 bp downstream
Tssr141823	transcription start site region 141823	988 bp downstream