rs248965596 SNP Detail

Summary

• ID
  rs248965596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95801466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGGTTGT TCCCTCTTCG
  GCTTCCGTAG ACGAGGTCGG GCGGACCTTC GTCCGGGGTT TCGGCACCCC CCCTTCCCCT
  TCCCCGGGGT CCGGGGGTGA CATTGCACCG CGCCCCTCCT GGGGTTGCGT CCTCGCCCCA
  CGCGGACTCC CCCTCGGCGC GCAGCTCCCT TTCGCCTTCC TTGGCCGGGG TTCCCTCCCT
  Y
  CCCCAGCTGC CCAGTCATGG GGGCTGCTGT GTTTTTCGGA TGCACCTTCG TCGCGTTCGG
  CCCAGCCTTC TCCCTTTTCC TGATCACTGT AGCTGGAGAC CCACTTCGGG TTATCATCCT
  GGTGGCGGGG TGAGTGTCGA GTGGTGGAGA CGGGGCCGAA CGTAGAGAAA AAGGTGCAGA
  AAGGGCTGGA GGAACTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358909677	MGP_WTSI_3_95698077	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs248965596					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358909677	MGP_WTSI_3_95698077	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95801466 () rs orientation: forward

Symbol	Name	Function Class
Aph1a	aph1 homolog A, gamma secretase subunit	mRNA-UTR
Cpgi13526	CpG island 13526	157 bp distal
Cpgi13527	CpG island 13527	115 bp proximal
Rr397845	regulatory region 397845	137 bp downstream
Rr581075	regulatory region 581075	1659 bp distal
Rr581076	regulatory region 581076	89 bp distal
Tssr30653	transcription start site region 30653	221 bp downstream
Tssr30654	transcription start site region 30654	180 bp downstream
Tssr30655	transcription start site region 30655	123 bp downstream
Tssr34559	transcription start site region 34559	1309 bp upstream
Tssr34560	transcription start site region 34560	1277 bp upstream