rs248967496 SNP Detail

Summary

• ID
  rs248967496
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26316367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGCACTTG GGAGGCAGAG
  GCAGGCAAAT TTCTGACTTT GAGGTCAGCC TGGTCTACAG AGTGAGTTCC AGGACAGCCA
  GGGCTACACA AAGAAACCCT GTCTCAGAAA ACAAAAACAA AAACAAACAA ACAAACAAAA
  GCATTGCCAC TAATCTAGCA GTGGTGCAGC ACTCTGGTTG GGTTTTTTGT TTTTTGTTTG
  K
  TTGGTTGGTT TGGTTTTTCC AGGCAGGGTT TCTCTGTGTA GCCCTGGCTG TCCTGGAACT
  CACTCTGTAG ACCAGGCTGG CCTCCTCTGC ATCTGGAACA CTGCAATTAA AGGCTTGCAC
  TGGCACTGAC CTGCTAGTGG CGCTCGCCTT TAATCCCAAC ACTCAGGAGG CAGAGGCAGG
  TGGGTATCTG TGAGTTTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397891225	MGP_WTSI_17_26234338	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248967496					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397891225	MGP_WTSI_17_26234338	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26316367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8797	CpG island 8797	1730 bp distal
Gm8186	predicted gene 8186	1598 bp downstream
Nme4	NME/NM23 nucleoside diphosphate kinase 4	1791 bp upstream
Tssr146914	transcription start site region 146914	1944 bp upstream
Tssr146915	transcription start site region 146915	1932 bp upstream
Tssr146916	transcription start site region 146916	1913 bp upstream
Tssr146917	transcription start site region 146917	1879 bp upstream
Tssr146918	transcription start site region 146918	1864 bp downstream