rs248967834 SNP Detail

Summary

• ID
  rs248967834
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95738784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGGTGGTA TTGGAATGTA AAGTGAAAAA
  CAAATAATTG TTTCAAAAAT TGCTTTTTGG ATTAGATTTG CCAGAGCTCT GCTGTTTGGG
  GTCCTGCACT TCAGAACTGC AGTGCTACTC AGTGATGAAT TACATACTGG GTTGTTGTTG
  K
  TGTTGGTGGT GGTGGTAGTG GCTTTTGGTT TTGttttgtt ttttgagaca gggttcccct
  gtatcccaga ctgcccttga gctcattata gagctaagga tggctttgaa ctcttgatcc
  ttctgcctct atacccaaag taaggggatt                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323104510	CHEV_9_95757150	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248967834					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95738784 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	within coordinates
Atr	ataxia telangiectasia and Rad3 related	866 bp upstream
Cpgi22158	CpG island 22158	649 bp proximal
Rr368834	regulatory region 368834	679 bp upstream
Rr401608	regulatory region 401608	1791 bp upstream
Tssr86577	transcription start site region 86577	897 bp upstream
Tssr86578	transcription start site region 86578	963 bp upstream
Tssr86579	transcription start site region 86579	1213 bp upstream
Tssr90940	transcription start site region 90940	828 bp downstream
Tssr90941	transcription start site region 90941	1133 bp downstream
Tssr90942	transcription start site region 90942	1150 bp downstream