rs248969679 SNP Detail

Summary

• ID
  rs248969679
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7460576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGACGG CTCGGCCCCG
  GAGGACGACG AGGAGACTGA CGGGGACTGA GTGGCCGCTG ACGACTCCGC CATGGCTGTA
  CGAGCAAGGG CGGGAGAAGG GTGAAGAGAG ACGTAGGGCG GGAGAGTGGG AGGGGACACA
  GAATAATCCA GCAGCTGGCT CTCCGAAGTT CCCGGCGACG CCTGTTCGGA AGACTGACTC
  S
  GACAGACTGA CTGACTCAGC CGAGCTCCGC AGGGAGAGAA GGAGTGCGAG CGCGCATGCG
  CACAAAGAGC CTGGACGCGC GGGCGGCGGC CTCGGAGGCG CGCAGCGACG CAATGCGCAG
  GCGCAAGAAC TGTCCCTCTG CGCTCCCGCA GGAAAGGACG CAGTGACTGG GCCCGCGGGT
  GGGGCAGGCC TCTCGGGGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401693246	MGP_WTSI_19_7557701	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248969679					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401693246	MGP_WTSI_19_7557701	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7460576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10559	CpG island 10559	within coordinates
Gm58988	predicted gene, 58988	within coordinates
Rr543685	regulatory region 543685	20 bp distal
Rr543686	regulatory region 543686	within coordinates
Rtn3	reticulon 3	within coordinates
Tssr5428	transcription start site region 5428	227 bp upstream
Tssr5429	transcription start site region 5429	143 bp upstream
Tssr5430	transcription start site region 5430	47 bp upstream
Tssr5431	transcription start site region 5431	77 bp downstream
Tssr157986	transcription start site region 157986	870 bp upstream
Tssr157987	transcription start site region 157987	88 bp upstream
Tssr157988	transcription start site region 157988	63 bp upstream
Tssr157989	transcription start site region 157989	1 bp upstream
Tssr157990	transcription start site region 157990	1 bp downstream
Tssr157991	transcription start site region 157991	30 bp downstream