rs248973300 SNP Detail

Summary

• ID
  rs248973300
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156765077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGCCACAT ATAAACCACA CACCCTCTGA
  CTCCAGGTAG AGTAATATTT AGATATGTTT GGAAGCCGGA TACCTAGTGT GTATAAACAC
  AAGCACAGTT TAAGACAACT GTCTTGATGC TTTTATTCAC TAACAGTTCC TTCTATCCTC
  W
  GAAGGAAAAA TGCAAGCAGT ATCCTAACTC AAAAGGCATC CTGAGTTTTC ACTTCTACAC
  TAACAGAGCT GCCCACTGAT GACTTTATCT CCATCACAGC ACGTGTGCGT TTGTGCGCTG
  CAGCATCCCC TCCACACCCA TCAGGACACA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320073081	CHEV_1_158867638	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248973300					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156765077 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930439D14Rik	RIKEN cDNA 4930439D14 gene			1287 bp upstream
Cpgi904	CpG island 904			1203 bp proximal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr367037	regulatory region 367037			1305 bp upstream
Rr421284	regulatory region 421284			within coordinates
Rr421285	regulatory region 421285			874 bp proximal
Rr421286	regulatory region 421286			1301 bp proximal
Rr421287	regulatory region 421287			1463 bp proximal
Rr421288	regulatory region 421288			1795 bp proximal
Rr421289	regulatory region 421289			1870 bp proximal
Tssr14474	transcription start site region 14474			329 bp downstream
Tssr14475	transcription start site region 14475			1275 bp downstream
Tssr14476	transcription start site region 14476			1304 bp downstream