rs248980306 SNP Detail

Summary

• ID
  rs248980306
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80863912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGAGATCTA TTCAGCGATG GTCGACCGCG
  CCCGGGCTCG TGGAGCCTCA GCCTCGGGAT AACGGCGCCT CGAAGGTGAG CCGCACTGGG
  AGGGCGGGGA AACAAACGCG GGGCACTGGG GGCCCTCTAG GCAGCCGCCC TGGCGTTGAC
  M
  GACGCCAGCC GCCCGCGTTT GCGGGCTGTC GCGGACCGAG GCTTAACAGG GCTATGACGC
  GGCGCCGCGG GATCCGCCGT GTCCGTTCCT TCCCGGCCGG GGTCGGACGC GGCGAGTCAG
  TTTTCTCCCA GCGGGGTGGG TGGGGGACCC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322284543	CHEV_7_88359050	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248980306					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80863912 () rs orientation: forward

Symbol	Name	Function Class
1700023D08Rik	RIKEN cDNA 1700023D08 gene	991 bp upstream
Cpgi19350	CpG island 19350	within coordinates
Gm73624	predicted gene, 73624	783 bp upstream
Pde8a	phosphodiesterase 8A	within coordinates
Tssr67494	transcription start site region 67494	880 bp downstream
Tssr67495	transcription start site region 67495	842 bp downstream
Tssr67496	transcription start site region 67496	822 bp downstream
Tssr67497	transcription start site region 67497	805 bp downstream
Tssr67498	transcription start site region 67498	668 bp downstream
Tssr67499	transcription start site region 67499	532 bp downstream
Tssr67500	transcription start site region 67500	401 bp downstream
Tssr67501	transcription start site region 67501	288 bp downstream
Tssr67502	transcription start site region 67502	98 bp downstream
Tssr73321	transcription start site region 73321	1004 bp upstream
Tssr73322	transcription start site region 73322	951 bp upstream
Tssr73323	transcription start site region 73323	493 bp upstream
Tssr73324	transcription start site region 73324	484 bp upstream