rs248980731 SNP Detail

Summary

• ID
  rs248980731
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9813055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTGCCAG GTCCTCTGAG
  CGCGCCTGGA CACCCTCTCC GCAGTCCTGC TCCTGCTTGG CGTGCGTGAG TGTGTGAGTG
  TGTGTGTGTG AGTGAGTGTG GGAGCGCGCG CGCGCGTGTG GCCGGGGATC CCCGCGGTCC
  CTGGCGGAGA AGGGCGCAGG CAGAGGACCG CAGCTCCCTC CTGGCCCTTT CGCTGAAGGG
  Y
  CAGCTCCGAG CTGGGCGTTC GGTTCCTCAC TTGGTCAGCG GGAGCCCAGG AAAGAGCCTG
  GCCACCGCGG TTCACAACAC TGGAGAAGCC AGGATCCTAG GGCACGCTTC TGCTGCGGTC
  GCCTAGGAGG ATAGAGGAAA GCAGAGGCGC CCACCACAGC AACTTAGGAC TTGTTCTCAG
  CCAGCGAGAC GCAACGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395370681	MGP_WTSI_16_9995284	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248980731					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395370681	MGP_WTSI_16_9995284	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9813055 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7945	CpG island 7945	within coordinates
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	within coordinates
Tssr139893	transcription start site region 139893	624 bp upstream
Tssr139894	transcription start site region 139894	179 bp upstream
Tssr139895	transcription start site region 139895	103 bp upstream
Tssr139896	transcription start site region 139896	108 bp downstream
Tssr139897	transcription start site region 139897	124 bp downstream
Tssr139898	transcription start site region 139898	157 bp downstream
Tssr139899	transcription start site region 139899	187 bp downstream
Tssr139900	transcription start site region 139900	221 bp downstream
Tssr139901	transcription start site region 139901	317 bp downstream
Tssr139902	transcription start site region 139902	335 bp downstream
Tssr139903	transcription start site region 139903	371 bp downstream
Tssr139904	transcription start site region 139904	437 bp downstream
Tssr139905	transcription start site region 139905	510 bp downstream
Tssr139906	transcription start site region 139906	615 bp downstream