rs248994336 SNP Detail

Summary

• ID
  rs248994336
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56810971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCATCTC CGTGCCACCT
  CCACTTAAGC CCAAGGAGGC TGTAGCAGGC TGTTGTTGTC CGGTTGGGCC ACTCTTTCCC
  TTTCCCGTCC CAAGCCGGTG CTTTCTATCG GAAGGAAGTT GCCATCTTTT TTTCTTCACC
  CTTTGGCCGG TCATCTAATG AGTCAGTGGC ATAAAGTAAT AAAAGAGAAC TAGAGATTGT
  R
  GCTTCCCGGT TCTGATGGTG CAAACTTTGC GCTGCCTGTG GGTGAGCCAA GTCCGCAGGA
  GCAGCTGACT TGGGCATGCG AGCTTCATCT CTGGGAGAGA GCTCTGCAGG GTTTCCATAA
  TAATAATTGA CCTGGGATCT CCAAGTGGCA CCGAGTGCCA TTGTTTACTA GTAAGCTTGT
  TAGTGTGCTC CACGCAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859391	CHEV_19_56897029	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248994336					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56810971 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	within coordinates
Ccdc186	coiled-coil domain containing 186	349 bp upstream
Cpgi11092	CpG island 11092	within coordinates
Rr406045	regulatory region 406045	121 bp downstream
Rr550140	regulatory region 550140	623 bp distal
Rr550141	regulatory region 550141	360 bp distal
Rr550142	regulatory region 550142	within coordinates
Tssr157215	transcription start site region 157215	575 bp downstream
Tssr159886	transcription start site region 159886	452 bp upstream
Tssr159887	transcription start site region 159887	319 bp upstream