rs248996603 SNP Detail

Summary

• ID
  rs248996603
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110974531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATACAGGG TCTCTCTATA
  TAACTCTGGC TGTTCTGGAA CTTACTCTGT AGGCCAGGCT GGCCTCAAAC TAACAGATCC
  ACCTGCCTCT ACCTCTGCCT CCCTACTGCT GCGATTAAAG GCATCTGGTA CCACCTAGCT
  TGTGTTTTAT TTAATTTTTT TTGAAGTATA ATTTTCTCTC TCCCTTCCTT CCTTCCTTTT
  W
  AATCTATTTT TGAGACTTGA TCTCCTTTTG TGTTGTGCTG ACTGGCTGGG AGCTCACTGT
  GTAGACATGG TTAACCACAC CCGGTAAAGT GAACTTTTAA TATTCAGTCA GCACACATTA
  ATTAAAGATC TATTATGTAT GGACACTGCT ACATTTAGAG GGTGTATATA GTTCTACCAT
  AGAGCTCAGA TTCAAAAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323195911	CHEV_9_111047967	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248996603					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110974531 () rs orientation: forward

Symbol	Name	Function Class
Lrrfip2	leucine rich repeat (in FLII) interacting protein 2	within coordinates
Rr687307	regulatory region 687307	424 bp distal
Tssr87483	transcription start site region 87483	1232 bp upstream