rs248999343 SNP Detail

Summary

• ID
  rs248999343
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30127102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCAATCC TCTATCTCCA
  GCCAGAAGCC GGGGAACCGG ACAAAGAGAT CCCCACCAGA AGCCCTTGCT TACAAAAGTC
  GGAGCAAAAT ACTGGATAAA GCAGATACTT AGTTTCAAAG TGACCACTGG ACTCAGGACA
  CACCTACCAG ATTCCTAAAC TCCAATACCT TCTCAAGCAC GGCACTACCT CTCTCCCCTC
  K
  TCTACAAAAA GTTCCTAACC CAGTCCAGTC CAACGACTTC AAAGATCTCC TAGTGTGAGA
  CAGTGAACTC GCCGGGGCGC GACTAATCGC CCAAGAAACC TTTAAATTTA GTTCAACTGT
  GTTTATTGCA GCGGCGGCGG AGAAGCCATT CAGTTAACTC GGAATTATGC GGCTTTTCAG
  GGACAACCGT CGCAAGCCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353511960	MGP_WTSI_2_30092610	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248999343					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353511960	MGP_WTSI_2_30092610	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30127102 () rs orientation: forward

Symbol	Name	Function Class
1700084E18Rik	RIKEN cDNA 1700084E18 gene	107 bp downstream
Cpgi11431	CpG island 11431	within coordinates
Lrrc8a	leucine rich repeat containing 8A VRAC subunit A	679 bp upstream
Rr396861	regulatory region 396861	411 bp upstream
Rr554257	regulatory region 554257	within coordinates
Rr554258	regulatory region 554258	559 bp proximal
Rr554259	regulatory region 554259	616 bp proximal
Rr554260	regulatory region 554260	727 bp proximal
Rr554261	regulatory region 554261	1331 bp proximal
Tssr17097	transcription start site region 17097	575 bp upstream
Tssr17098	transcription start site region 17098	590 bp upstream
Tssr23362	transcription start site region 23362	536 bp downstream