rs249001491 SNP Detail

Summary

• ID
  rs249001491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120632717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTCATTT ACATTCACTA
  TTATAGCTTC TTTTAAGTAT GTTGGACCAG TACTTCTAGA AAGTTGAGCT CAATTTAGTA
  AGGTATAGTC TTGGGTTTAA CACCCAACTT GGAGAGATGT CAGGGAATAT ACCAGAATGA
  GAGAAGACAA AGTATTTTGT TATATTCTAT GCACATTAGG TAACAAAATA TTCTTATTAA
  Y
  GAAAGATGGT AAATAGATAC TTTAACACCT AAGGAGTTTG TGATAAGGAA TGCCATTTCT
  CATCCAGGGG TCATTATTTC ATAAACGGAA ATCTCTTCAG TGTAGTGTGA TGAAATTAAC
  GTAAAGATAA ATTTGTTTTA TAATTAATTT AAAATTAATG TACAGAATCT GTCGCTGTCA
  AATGAAAAGC ATATTCTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372947395	MGP_WTSI_7_128177008	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249001491					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372947395	MGP_WTSI_7_128177008	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120632717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19654	CpG island 19654	540 bp proximal
Gm9905	predicted gene 9905	within coordinates
Gm72635	predicted gene, 72635	290 bp downstream
Mettl9	methyltransferase like 9	951 bp upstream
Rr166622	regulatory region 166622	283 bp proximal
Rr168961	regulatory region 168961	317 bp distal
Rr400600	regulatory region 400600	891 bp upstream
Tssr68809	transcription start site region 68809	974 bp downstream
Tssr68810	transcription start site region 68810	727 bp downstream
Tssr68811	transcription start site region 68811	707 bp downstream
Tssr68812	transcription start site region 68812	692 bp downstream
Tssr68813	transcription start site region 68813	922 bp upstream
Tssr68814	transcription start site region 68814	1026 bp upstream
Tssr68815	transcription start site region 68815	1048 bp upstream
Tssr68816	transcription start site region 68816	1087 bp upstream
Tssr68817	transcription start site region 68817	1245 bp upstream
Tssr68818	transcription start site region 68818	1288 bp upstream
Tssr74531	transcription start site region 74531	929 bp downstream