rs249002317 SNP Detail

Summary

• ID
  rs249002317
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112642522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCCCTTC TGGTGCGTCT
  GAAGACAGCT ACAGTACTTA TGTATAATAA TAAATAAATC TTCAAAAAAA AAAAAACCAA
  AAACCAAAAA CAAACAAACC AACCTGTGGT TCCTGACCCT CTTCCCCCCT CACAGAGGTC
  TTCCCCCCTC TCTCACAGAG GTCTTCCTCC CTCTCATCCC TGGCAGCTTG GTAGGATGCA
  R
  GCACTATCCT GAGCTAAGAG GTCTGGGCAT CAGCTACATA GTGAGATATG CTCTTGAGAC
  AGCTCCCAAG TTAGATGGCA CCCGAAATCT AGAGAGGTTC TGCCTGTAGC AGCCGGACTG
  TGGCTCTGTG ATAGCCTCTG TCATCTATAT GCCAGTAGAG AGGCATCTCG GAGTGGCAGG
  TGTCAGGGTT CTCAGCACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170098	CHEV_12_113914299	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249002317					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112642522 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	1256 bp upstream
Cpgi5173	CpG island 5173	1179 bp distal
Gm30150	predicted gene, 30150	118 bp downstream
Rr369631	regulatory region 369631	549 bp downstream
Rr473553	regulatory region 473553	1823 bp distal
Rr473554	regulatory region 473554	1667 bp distal
Rr473555	regulatory region 473555	1688 bp distal
Rr473556	regulatory region 473556	141 bp distal
Rr473557	regulatory region 473557	1085 bp distal
Rr473558	regulatory region 473558	620 bp distal
Rr473559	regulatory region 473559	429 bp distal
Rr473560	regulatory region 473560	183 bp distal
Tssr115391	transcription start site region 115391	1665 bp downstream
Tssr117879	transcription start site region 117879	1813 bp upstream
Tssr117880	transcription start site region 117880	1721 bp upstream
Tssr117881	transcription start site region 117881	1703 bp upstream
Tssr117882	transcription start site region 117882	1324 bp upstream
Tssr117883	transcription start site region 117883	1274 bp upstream
Tssr117884	transcription start site region 117884	1251 bp upstream