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rs249002317 SNP Detail
Summary
  • ID
    rs249002317
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr12:112642522 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGCCCCCTTC TGGTGCGTCT
    GAAGACAGCT ACAGTACTTA TGTATAATAA TAAATAAATC TTCAAAAAAA AAAAAACCAA
    AAACCAAAAA CAAACAAACC AACCTGTGGT TCCTGACCCT CTTCCCCCCT CACAGAGGTC
    TTCCCCCCTC TCTCACAGAG GTCTTCCTCC CTCTCATCCC TGGCAGCTTG GTAGGATGCA
    R
    GCACTATCCT GAGCTAAGAG GTCTGGGCAT CAGCTACATA GTGAGATATG CTCTTGAGAC
    AGCTCCCAAG TTAGATGGCA CCCGAAATCT AGAGAGGTTC TGCCTGTAGC AGCCGGACTG
    TGGCTCTGTG ATAGCCTCTG TCATCTATAT GCCAGTAGAG AGGCATCTCG GAGTGGCAGG
    TGTCAGGGTT CTCAGCACAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss324170098 CHEV_12_113914299 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs249002317 SNP A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:112642522 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Akt1 thymoma viral proto-oncogene 1 1256 bp upstream
Cpgi5173 CpG island 5173 1179 bp distal
Gm30150 predicted gene, 30150 118 bp downstream
Rr369631 regulatory region 369631 549 bp downstream
Tssr115391 transcription start site region 115391 1665 bp downstream
Tssr117879 transcription start site region 117879 1813 bp upstream
Tssr117880 transcription start site region 117880 1721 bp upstream
Tssr117881 transcription start site region 117881 1703 bp upstream
Tssr117882 transcription start site region 117882 1324 bp upstream
Tssr117883 transcription start site region 117883 1274 bp upstream
Tssr117884 transcription start site region 117884 1251 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory