rs249003188 SNP Detail

Summary

• ID
  rs249003188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:84105901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCGCCG CCCCGGCCGC
  GCTCGGGGTT GATTCGTACC ACCTTGCAAG GAAGTGAACG CTTCGCACGG GAAGGGGAGG
  CGCCTGCGCC GGCCGCCGGC CGCCTTGCCG CTCGGGGACG CTTGGGCTAC CGCGGCTGCG
  ATCGCCAGGG CGCTGGCCCT TTAGCTTGGC GCCCCCCGCC CCCGGTGAAG GAATCGAATC
  Y
  CTTCGCAGAG CGTGCGGAGG GTGGGGATAT CCGGGGCCTC TCCCGCGCCC GGAGGAAAGG
  GGAGGGCGGA GGAAATCCTA GGCCAGTGTG AGCCGAGAGG ATTCAAACCA AAACAAAAAG
  ATTAAAGGAG CAGCGGCTGC AGCGGCCGCG GGGCCGGGCA GGGATCCTGG GGTGGCGCGC
  CCGGGTTCCG CGGGGGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss401475725	MGP_WTSI_18_84257168	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs249003188					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401475725	MGP_WTSI_18_84257168	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:84105901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10336	CpG island 10336	1378 bp distal
Cpgi10337	CpG island 10337	within coordinates
Gm56504	predicted gene, 56504	1044 bp upstream
Gm58899	predicted gene, 58899	within coordinates
Ptgr3	prostaglandin reductase 3	349 bp upstream
Rr353212	regulatory region 353212	within coordinates
Rr405764	regulatory region 405764	1003 bp upstream
Tshz1	teashirt zinc finger family member 1	70 bp upstream
Tssr152202	transcription start site region 152202	89 bp downstream
Tssr152203	transcription start site region 152203	301 bp upstream
Tssr152204	transcription start site region 152204	410 bp upstream
Tssr152205	transcription start site region 152205	442 bp upstream
Tssr152206	transcription start site region 152206	904 bp upstream
Tssr154120	transcription start site region 154120	1785 bp upstream
Tssr154121	transcription start site region 154121	1507 bp upstream
Tssr154122	transcription start site region 154122	1373 bp upstream
Tssr154123	transcription start site region 154123	1336 bp upstream
Tssr154124	transcription start site region 154124	1285 bp upstream
Tssr154125	transcription start site region 154125	1018 bp upstream
Tssr154126	transcription start site region 154126	60 bp upstream