rs249013325 SNP Detail

Summary

• ID
  rs249013325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117582177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTACATA GATCCATTTG
  TTGAGGAACA CGATGCAGAT GGACACCAGC AGGTTGAACA GGAGCCCGGC GGCGATGCGC
  CCGTTGCCCC GGACCCGGTC CGCCAGCGAT GCCATGATGC CCGCCGGCTG CGGAGCAGCG
  TCCTCGGCCG AGCCCGGGCT GTCCAGCCTC CCCGCGGGGC GCTCGGACGC TCTCCCGCTG
  Y
  CCCGGCTCTC CGCCGCCGCG CGCCCGCAGC CGCCCGCTCC ACGGTCCGGC CGGAGACAGG
  CATGCGCCAG CCGGGTCCCG GTCGCTGCGC CGCGAGGTAA TAGGCCGCCG CCCTCCGAGC
  GGGTCCGCCA CGGCTCCTCC CAGCCCCGCC CCCGCGCAGC CACGTGATTC CGCCGCGCAG
  GCGCGCTCGG CGCTCCGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381924973	MGP_WTSI_10_117183328	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249013325					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381924973	MGP_WTSI_10_117183328	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117582177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	487 bp distal
Cpgi2239	CpG island 2239	24 bp proximal
Gm66856	predicted gene, 66856	209 bp upstream
Rr439608	regulatory region 439608	1815 bp distal
Rr439610	regulatory region 439610	309 bp distal
Rr439611	regulatory region 439611	83 bp proximal
Rr439612	regulatory region 439612	220 bp proximal
Slc35e3	solute carrier family 35, member E3	within coordinates
Tssr99471	transcription start site region 99471	59 bp downstream
Tssr99472	transcription start site region 99472	84 bp downstream