rs249021134 SNP Detail

Summary

• ID
  rs249021134
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:91077566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAAAGAT AGCTACATGG
  TGATTGTCAC ATCACAACGG GTCACTTGTG TGTTCGTTAC TAGTCCTCTC TGTGCTTCAG
  CTTTGCCTTC TATCTGTAAA ATGGAAACGA TGCTATTCTG GGAAGTGGGT GTAGACATTA
  AATAAAATAG TCAGTTGTTT AAAAAAAAAC ATTGTATATA GAAGTCTGCA AACCTCCCTG
  M
  TAGAATATGT GCCCCAATGT CTTGTGATCG TTATTGTTCA TTAGACATGA GTCAAAGAAT
  TGCCTTTACC AAGAATGATT TTTAAAAAAC AGTATTCTTT TGAGCTCTTT GGCATACATA
  TATTAAATCT AAGAATTGTT TGTTATCCAG AGGTCTTTTA TTTGCATCCA ACTTAACAGA
  TGTACCAACA TACAAATGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394950070	MGP_WTSI_15_91023794	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249021134					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394950070	MGP_WTSI_15_91023794	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:91077566 () rs orientation: forward

Symbol	Name	Function Class
Abcd2	ATP-binding cassette, sub-family D member 2	1564 bp upstream
Rr507988	regulatory region 507988	1074 bp distal
Tssr135947	transcription start site region 135947	1962 bp upstream
Tssr135948	transcription start site region 135948	1931 bp upstream
Tssr135949	transcription start site region 135949	1908 bp upstream
Tssr135950	transcription start site region 135950	1838 bp upstream
Tssr135951	transcription start site region 135951	1641 bp upstream
Tssr135952	transcription start site region 135952	1538 bp upstream
Tssr135953	transcription start site region 135953	1336 bp upstream
Tssr135954	transcription start site region 135954	1313 bp upstream