rs249028089 SNP Detail

Summary

• ID
  rs249028089
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGGTTG CTAAATCCAT
  AGCCATGTGG TGATGTTCTA AGGAAGGACT TATCTGTAGA ACAATGTGGG GAAACTGTAG
  CCAGACAACG GTAATGTTGG GAAGGAGCCA AAGAAACTTA TTCTAAAAAC TAACATTTTG
  TTTACAGATT AGCATTTATA GGGAAAAACT AAATCCAATG TACCAGGCCC TAGGGCAGCT
  K
  GGGACTTCCC TATAGCTGAA CAGCTTCTGC TGTGAACAGC TGTCTGAATC CAGACATCTC
  AGGGACAGCT TGTAAGGAGG CAGTTGTCTG AATCCAGCCA TCTCAAGGAC AACTTCTCCA
  TCTTGTTGGC AGGGTCAAAC AACCTAGGAG CGAACACCTA CCCCACTTCT CCAAATGTTT
  TCTTAACTGT CTGTTAACAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104725	CHEV_12_77354394	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249028089					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300181 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	1480 bp proximal
Gm47525	predicted gene, 47525	768 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1891 bp upstream
Rr403350	regulatory region 403350	1638 bp upstream
Rr468112	regulatory region 468112	1401 bp proximal
Tssr113934	transcription start site region 113934	1802 bp upstream
Tssr113935	transcription start site region 113935	1837 bp upstream
Tssr113936	transcription start site region 113936	1883 bp upstream
Tssr113937	transcription start site region 113937	1925 bp upstream
Tssr113938	transcription start site region 113938	1941 bp upstream
Tssr113939	transcription start site region 113939	1964 bp upstream
Tssr116711	transcription start site region 116711	1639 bp downstream
Tssr116712	transcription start site region 116712	1665 bp downstream