rs249043847 SNP Detail

Summary

• ID
  rs249043847
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22715368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTCCCC CCTCCCTCCC
  TCTGTCCCAC CTCTTCTTGC CCCTCTTGTT CCAGACCATC TTTCCCACGT GTTCTCATTT
  TCATTCTCAG CCTCTCCCAG TGTCTACTCT GGTGGAGTTT GTAATAGCTG CCACTGACTG
  TACTGCAAAA GAAGTCACAG ATCCAGCCAA ATGCAACCTG CTGGCAGAGA AGGTGAGTGG
  S
  CCAGACCCTA GGGCTCCCAA TCTGGTTGTG GAACAAAGTA TCTTTTTGCA GTTTATATCT
  TGGGGCTGAA GAAAGAAAGT AAAAAACAAA CAAACAAAAA GTATAAACTG TCCCCTTGTG
  AAGCTGGAGA AATGGCTCAT CAGTTAAGAG CACACACTTC TTTCTTTGTT CATGCAAAGG
  GACCAAGGTC AGTTCCCGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628405	MGP_WTSI_16_22896691	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249043847					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628405	MGP_WTSI_16_22896691	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22715368 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Rr513337	regulatory region 513337	1822 bp distal
Tssr4819	transcription start site region 4819	1277 bp downstream
Tssr4820	transcription start site region 4820	661 bp downstream
Tssr137567	transcription start site region 137567	1833 bp downstream
Tssr137568	transcription start site region 137568	1802 bp downstream
Tssr137569	transcription start site region 137569	1781 bp downstream
Tssr137570	transcription start site region 137570	1764 bp downstream
Tssr137571	transcription start site region 137571	1426 bp downstream
Tssr137572	transcription start site region 137572	1327 bp downstream
Tssr137573	transcription start site region 137573	1317 bp downstream
Tssr137574	transcription start site region 137574	1298 bp downstream
Tssr137575	transcription start site region 137575	1288 bp downstream
Tssr137576	transcription start site region 137576	603 bp downstream
Tssr137577	transcription start site region 137577	186 bp downstream
Tssr137578	transcription start site region 137578	42 bp downstream
Tssr137579	transcription start site region 137579	1497 bp upstream
Tssr137580	transcription start site region 137580	1547 bp upstream
Tssr140506	transcription start site region 140506	1757 bp upstream
Tssr140507	transcription start site region 140507	1394 bp upstream
Tssr140508	transcription start site region 140508	1352 bp upstream
Tssr140509	transcription start site region 140509	1334 bp upstream
Tssr140510	transcription start site region 140510	1286 bp upstream
Tssr140511	transcription start site region 140511	1272 bp upstream
Tssr140512	transcription start site region 140512	52 bp upstream
Tssr140513	transcription start site region 140513	19 bp upstream
Tssr140514	transcription start site region 140514	4 bp upstream
Tssr140515	transcription start site region 140515	1558 bp downstream
Tssr140516	transcription start site region 140516	1577 bp downstream