rs249045990 SNP Detail

Summary

• ID
  rs249045990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12654999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT TTCCTCTTCT CTCCTCTCCC
  Y
  TCCCTTCTCT CCTTATGTTT GTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	SJL/J	ST/bJ	SWR/J
ss918533849	MGP_WTSI_7_12921072	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	SJL/J	ST/bJ	SWR/J
rs249045990					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918533849	MGP_WTSI_7_12921072	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12654999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	608 bp proximal
Gm57203	predicted gene, 57203	within coordinates
Rps5	ribosomal protein S5	1224 bp upstream
Rr368230	regulatory region 368230	993 bp upstream
Rr642402	regulatory region 642402	within coordinates
Rr642403	regulatory region 642403	1019 bp proximal
Rr642404	regulatory region 642404	1304 bp proximal
Tssr64485	transcription start site region 64485	1243 bp upstream
Tssr64486	transcription start site region 64486	1882 bp upstream
Tssr70626	transcription start site region 70626	998 bp downstream