rs249047871 SNP Detail

Summary

• ID
  rs249047871
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128046435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAGATAG CTGCATCTGG
  GTTGGACTGA CATCTCTAGT GCTGAGGTAC AACTGAGGAA GCCAGAACCC AAGAATCTGA
  GGTGCATCAG AGAAAAGGCC AAGCCTGTGG CTGCCACTCC TCCAGCCAGA GGTAGAGAGC
  ATTTACTCTA GAGAATCTGG TGAGCCCCCA AAACAAGTTA CATGTGGATA AGGGACGGGC
  M
  GAGAGGCAGG ACCGCAGGAC TGAACAGTCT AAGGTGTGTG GGCACAAGTA GAAGGACCCA
  AAGAACTGGC CTGAGGAGGC GAATCCCCTG ATGACCTAGG AAACTGGCGA CTTTGGCTGT
  ATACCTAGCT CTTACAGAGT AGGGCCCAGG GGAAGATGGC TACAATATTG CACAAAGGAT
  CCCAACAGAA TTGTGAGAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323532323	CHEV_10_127647622	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249047871					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128046435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	1052 bp proximal
Gls2	glutaminase 2 (liver, mitochondrial)	562 bp downstream
Rr402345	regulatory region 402345	1144 bp upstream
Spryd4	SPRY domain containing 4	within coordinates
Tssr99849	transcription start site region 99849	1200 bp downstream
Tssr99850	transcription start site region 99850	1222 bp downstream