rs249053928 SNP Detail

Summary

• ID
  rs249053928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7354054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAAAAAT GCTAAGGTCT
  CAGGGGTTGG TGAGATGGTT CTGTTGGCAA AGTTCTTGGT GTTCAAACTC AAGGACCTGA
  GTTTAATTCC CAGCCAACAT AGAAATGTTC AATGGCAGCT GCACTGACTA AACCCCAACG
  TATCAAAGAA GAGTGTGGTT GCTAGGGCTT TCTGAACCTA AGTCTGTTTA AGTGAATCAG
  R
  AAACTCCAGA CTCAATGAGA ACATACGTCT CAAAAGATAT GCTAGGTAGT GGCTGAGGAA
  TATACCTGAA GCCTCCACAT ACATGTGCAC ACATATATAT GAATGAACAC TTACATACAC
  ATACACAGAC ACACACACAG ACACACACAC ACACACACAC ACACACACAC ACACACATAA
  ACACACACAT GCTGGTCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560336	MGP_WTSI_9_7354054	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249053928					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560336	MGP_WTSI_9_7354054	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7354054 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	508 bp downstream
Tssr83713	transcription start site region 83713	1668 bp downstream
Tssr83714	transcription start site region 83714	1484 bp downstream
Tssr83715	transcription start site region 83715	1440 bp downstream
Tssr83716	transcription start site region 83716	1147 bp downstream
Tssr83717	transcription start site region 83717	1136 bp downstream
Tssr83718	transcription start site region 83718	1102 bp downstream
Tssr83719	transcription start site region 83719	1069 bp downstream
Tssr83720	transcription start site region 83720	1036 bp downstream
Tssr83721	transcription start site region 83721	805 bp downstream
Tssr83722	transcription start site region 83722	524 bp downstream
Tssr83723	transcription start site region 83723	477 bp downstream
Tssr83724	transcription start site region 83724	158 bp downstream
Tssr83725	transcription start site region 83725	21 bp downstream
Tssr83726	transcription start site region 83726	44 bp upstream
Tssr83727	transcription start site region 83727	656 bp upstream
Tssr83728	transcription start site region 83728	748 bp upstream
Tssr83729	transcription start site region 83729	770 bp upstream
Tssr83730	transcription start site region 83730	1250 bp upstream
Tssr83731	transcription start site region 83731	1264 bp upstream
Tssr83732	transcription start site region 83732	1305 bp upstream
Tssr83733	transcription start site region 83733	1342 bp upstream
Tssr83734	transcription start site region 83734	1770 bp upstream
Tssr83735	transcription start site region 83735	1792 bp upstream
Tssr88067	transcription start site region 88067	1041 bp upstream
Tssr88068	transcription start site region 88068	995 bp upstream
Tssr88069	transcription start site region 88069	549 bp upstream
Tssr88070	transcription start site region 88070	697 bp downstream
Tssr88071	transcription start site region 88071	1361 bp downstream