rs249065556 SNP Detail

Summary

• ID
  rs249065556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155118102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCG AATGCTAAAC TCGATGAAGG
  Y
  GCGGTGAACT ACTCCGCAGC GTCGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320572685	CHEV_2_155101918	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249065556					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155118102 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12515	CpG island 12515	within coordinates
Gm75512	predicted gene, 75512	within coordinates
Map1lc3a	microtubule-associated protein 1 light chain 3 alpha	182 bp upstream
Rr568016	regulatory region 568016	within coordinates
Rr568017	regulatory region 568017	65 bp proximal
Tssr21073	transcription start site region 21073	157 bp upstream
Tssr21074	transcription start site region 21074	236 bp upstream
Tssr21075	transcription start site region 21075	298 bp upstream
Tssr21076	transcription start site region 21076	321 bp upstream
Tssr21077	transcription start site region 21077	400 bp upstream
Tssr21078	transcription start site region 21078	414 bp upstream
Tssr21079	transcription start site region 21079	437 bp upstream
Tssr21080	transcription start site region 21080	535 bp upstream
Tssr21081	transcription start site region 21081	708 bp upstream
Tssr21082	transcription start site region 21082	734 bp upstream
Tssr21083	transcription start site region 21083	750 bp upstream
Tssr21084	transcription start site region 21084	781 bp upstream
Tssr21085	transcription start site region 21085	898 bp upstream