rs249069566 SNP Detail

Summary

• ID
  rs249069566
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5913101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGGGACG TGATTGAAAT TGATCTTAGT
  AGTTTCCTTT AGGCATTTGG GATTTGGGCA ACTAGCCAGA CTTGGCTCCT GGTCCCCTTC
  AGAGCCTTTT AAACTCCCAG AGAGCTTCGA TCAGGTCCCC ACTGCTCATC AGCATACTGG
  M
  GATTTTAAAT TAGCCAGTTG ATTAAAGTTT AACAAGATCT TCATAAATGT CTTCGCCATT
  TCTTTGGAAC ATCAATAATA GGTATCGCCG CTTCGATTCC TAATACTGTA CACACTGTAA
  CAGACATCGA ATTTTGGGGG GAAATGGAAA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324224089	CHEV_13_5862348	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249069566					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5913101 () rs orientation: forward

Symbol	Name	Function Class
B230207M22Rik	RIKEN cDNA B230207M22 gene	1904 bp upstream
Cpgi5253	CpG island 5253	1166 bp distal
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr387905	regulatory region 387905	531 bp downstream
Rr403559	regulatory region 403559	1438 bp upstream
Rr474541	regulatory region 474541	1915 bp distal
Rr474542	regulatory region 474542	1610 bp distal
Rr474543	regulatory region 474543	1461 bp distal
Tssr118237	transcription start site region 118237	1601 bp downstream
Tssr118238	transcription start site region 118238	1576 bp downstream
Tssr118239	transcription start site region 118239	1552 bp downstream
Tssr118240	transcription start site region 118240	1538 bp downstream
Tssr118241	transcription start site region 118241	1465 bp downstream
Tssr118242	transcription start site region 118242	1429 bp downstream
Tssr118243	transcription start site region 118243	1227 bp downstream
Tssr118244	transcription start site region 118244	481 bp downstream
Tssr118245	transcription start site region 118245	230 bp downstream
Tssr118246	transcription start site region 118246	713 bp upstream
Tssr118247	transcription start site region 118247	779 bp upstream
Tssr118248	transcription start site region 118248	1384 bp upstream
Tssr118249	transcription start site region 118249	1589 bp upstream
Tssr118250	transcription start site region 118250	1648 bp upstream
Tssr118251	transcription start site region 118251	1668 bp upstream
Tssr118252	transcription start site region 118252	1748 bp upstream
Tssr121316	transcription start site region 121316	1929 bp upstream
Tssr121317	transcription start site region 121317	1898 bp upstream
Tssr121318	transcription start site region 121318	1821 bp upstream
Tssr121319	transcription start site region 121319	1203 bp downstream
Tssr121320	transcription start site region 121320	1227 bp downstream
Tssr121321	transcription start site region 121321	1250 bp downstream
Tssr121322	transcription start site region 121322	1271 bp downstream