rs249070066 SNP Detail

Summary

• ID
  rs249070066
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70910360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGCTGCG TACTCGGACA
  GCCACCAATC GCTGGCGCCT TGGGGCCGCT CACCCACCAA TCAAGAGTTG CGCCTCTGCG
  TCGGTCCATC CTTACTTCTC CGCCTACCAA CGCAGAGAGA AGGACCAGTT CCGTCCGCCA
  ATCCCTGCCG GCCACAGCTA GCTTTCCCTC CTTGTCGCCT TCCTTTTACC AATCGCAGTG
  S
  CTCCTTTTGA CCCACGGCTA GCCAATCAGG AGTGCGATCC AGCCCGCCTT GGCGTTCGTT
  CGCAGAGGCA GGTCTCAGTC GATTCGGAGG AGCCGGTGTT ACCGCCTTCT TCCAGCCGCT
  GAGTGTAGCT TGAAGGAAGT GGCGGGAAGC CGGTGTGGGG CGGAATCCAT CACTCCCGGG
  ATCGCTTCGG TAGGGGCTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323738903	CHEV_11_70833036	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249070066					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70910360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	within coordinates
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	77 bp upstream
Rr369277	regulatory region 369277	245 bp upstream
Rr402697	regulatory region 402697	28 bp downstream
Rr450471	regulatory region 450471	within coordinates
Rr450472	regulatory region 450472	88 bp proximal
Rr450473	regulatory region 450473	297 bp proximal
Tssr102806	transcription start site region 102806	36 bp upstream
Tssr102807	transcription start site region 102807	59 bp upstream
Tssr102808	transcription start site region 102808	92 bp upstream
Tssr102809	transcription start site region 102809	107 bp upstream
Tssr102810	transcription start site region 102810	334 bp upstream
Tssr102811	transcription start site region 102811	361 bp upstream
Tssr109052	transcription start site region 109052	1013 bp upstream
Tssr109053	transcription start site region 109053	267 bp upstream
Tssr109054	transcription start site region 109054	244 bp upstream