rs249076939 SNP Detail

Summary

• ID
  rs249076939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69574553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGATGTA AGGGATGGAG
  CAAGTTACTT TCCTAAGTGA GCGGTCTCAC TGGCTTTGTT GAATTTTGAA GGCAGTCTCA
  CTCTGTAGCC TAGGCTGACC TTGAACTTTA GGCTAACCTA TCACATGGGC TTCATATGTG
  GGATTATAGG CACGAACCTA GTTGTTCATA GGCGGGTGCC TTTTCTCCCT GCAAGGACTT
  Y
  GGCATCTTGT TCTTGAGTCT TCAGATTTGC CTCTCCACCC CCGTTCCCAA CTCTCTGGTC
  TAACTCCCCA CTCCAAGTCA GCTCTGCTAC CTCATATCAA CACTCCACGG AGCCCACAGT
  TCTCACCTGC ACTGTAGCAG CTATTGTAGG CACGGTCAGG ATCAGAAGGC ATACTTCTGA
  TACATCGGAA TAGAGTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383788716	MGP_WTSI_11_69497229	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249076939					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383788716	MGP_WTSI_11_69497229	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69574553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1434 bp distal
Rr450067	regulatory region 450067	1892 bp distal
Rr450068	regulatory region 450068	1669 bp distal
Rr450069	regulatory region 450069	1153 bp distal
Rr450070	regulatory region 450070	764 bp distal
Rr450071	regulatory region 450071	106 bp proximal
Rr450072	regulatory region 450072	1522 bp proximal
Rr450073	regulatory region 450073	1817 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	1643 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	596 bp upstream
Tssr102520	transcription start site region 102520	628 bp upstream
Tssr102521	transcription start site region 102521	669 bp upstream
Tssr102522	transcription start site region 102522	762 bp upstream
Tssr102523	transcription start site region 102523	824 bp upstream
Tssr108774	transcription start site region 108774	1923 bp upstream
Tssr108775	transcription start site region 108775	1871 bp upstream
Tssr108776	transcription start site region 108776	1831 bp upstream
Tssr108777	transcription start site region 108777	1774 bp upstream
Tssr108778	transcription start site region 108778	1746 bp upstream
Tssr108779	transcription start site region 108779	1722 bp upstream
Tssr108780	transcription start site region 108780	1648 bp upstream
Tssr108781	transcription start site region 108781	1548 bp downstream
Tssr108782	transcription start site region 108782	1610 bp downstream
Tssr108783	transcription start site region 108783	1793 bp downstream
Tssr108784	transcription start site region 108784	1810 bp downstream