rs249085605 SNP Detail

Summary

• ID
  rs249085605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45224710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggtatggac agagcttagt aatcagaaac
  tagattgtcc acacacctct gtgagaatct tctcacagtg tgctactaag ttggggtaga
  gactagcaga aaaaggcaga gggtataggG ATGAGATCTC GAATTTTCTC TGGTATCCAT
  Y
  AAAGTCAGCA GAGTCATGTC ACTCATGTAG TGAAAAGGTA GAGACAATTA TATAGAAATA
  GAGCCACAAG GGGCTTTTGT TATAAGGTGA CCATGGAAAC AGAAAGGGTA TAAAAGCCTT
  TGGAAAGTAA ACACAGTGGA AACAGCATCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324582448	CHEV_14_45606928	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249085605					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45224710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	1472 bp proximal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	within coordinates
Gm63525	predicted gene, 63525	1190 bp downstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	942 bp upstream
Rr491040	regulatory region 491040	540 bp proximal
Tssr4380	transcription start site region 4380	1515 bp downstream
Tssr125199	transcription start site region 125199	911 bp upstream
Tssr125200	transcription start site region 125200	939 bp upstream
Tssr125201	transcription start site region 125201	1203 bp upstream
Tssr125202	transcription start site region 125202	1323 bp upstream
Tssr125203	transcription start site region 125203	1400 bp upstream
Tssr125204	transcription start site region 125204	1643 bp upstream