rs249086361 SNP Detail

Summary

• ID
  rs249086361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110682951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAAGGAA GGGCTTTGTA
  TCCCAGGCTA GAGGCAGCTT TAACTCAAAT GCTCGGCCTG CTGTCACCGA GCTTGACCCA
  GACAGTATAC TAGGCTGGCT TGAGAAGTGT TTGCAGAGCG CGGGCATTTG GAAATTGCAA
  AGTCATTTTT TAAAGTTTTT CCTTCATTTT TAACAAACAT TAAAGACGGG CAGCGCAGTG
  Y
  TTTCATTTTA TTTAAGGGCT ATATAGGAAA ATGAAGCATT TCAAACTATA CTTCCAGGTG
  GTATTTTAAA AGATGGGTTA TGTATGTATG CCACAGTATG CAACATTTTA GCTTTCCAAA
  AATGAAGGTA TGTAAACGAG AAATGTCCCA TCTCTGTTAA GCATGCATTT TTTTTTTTCA
  ATAAGATGGG TTACTAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372719444	MGP_WTSI_7_118227258	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249086361					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372719444	MGP_WTSI_7_118227258	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110682951 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19582	CpG island 19582	142 bp distal
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	714 bp upstream
Gm57201	predicted gene, 57201	within coordinates
Rr381309	regulatory region 381309	within coordinates
Rr653396	regulatory region 653396	1169 bp distal
Rr653397	regulatory region 653397	738 bp distal
Rr653398	regulatory region 653398	224 bp distal
Rr653399	regulatory region 653399	872 bp proximal
Rr653400	regulatory region 653400	1463 bp proximal
Tssr68539	transcription start site region 68539	539 bp downstream
Tssr68540	transcription start site region 68540	517 bp downstream
Tssr68541	transcription start site region 68541	400 bp downstream
Tssr74298	transcription start site region 74298	1689 bp upstream
Tssr74299	transcription start site region 74299	1493 bp upstream
Tssr74300	transcription start site region 74300	1238 bp upstream
Tssr74301	transcription start site region 74301	1204 bp upstream
Tssr74302	transcription start site region 74302	1113 bp upstream
Tssr74303	transcription start site region 74303	707 bp upstream