rs249089574 SNP Detail

Summary

• ID
  rs249089574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72221176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCCCCCCA GCTCCCATTA GCCGCCCGGG
  CAGCTGGTGA CCTTGCATTT CTGCAAGGGA GCAACCCACA CTCACTGGCC AGGTCAGTTC
  CACGGAGCTC TGGAGATCAC CGTATGGATG TATCTCAGGA CTGGAAAACT GGGAAAATCG
  R
  ACAACTGTTT TGTGTATCTC TGCCTCCATC TCCTCCAAAA GCAAGTACTC AATAAACATA
  TGAAgaagaa aggaaggaag gaaggaagga aggaaggagg gagggaggga gggagggagg
  gagggaggga gggagagaag gaaggaggaa                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342258	CHEV_2_72228889	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249089574					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72221176 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr558965	regulatory region 558965	1 bp distal
Rr558966	regulatory region 558966	642 bp distal
Rr558967	regulatory region 558967	127 bp proximal
Rr558968	regulatory region 558968	1585 bp proximal
Tssr18338	transcription start site region 18338	427 bp downstream
Tssr18339	transcription start site region 18339	93 bp downstream
Tssr18340	transcription start site region 18340	77 bp downstream
Tssr18341	transcription start site region 18341	60 bp downstream